All the checkboxes inside a ng-repeat are getting checked when I select just one

I have list of objects named rolePermissionList like this:

[{"id":1,"name":"createUser","type":"user","marked":1},{"id":2,"name":"deleteUser","type":"user","marked":1},{"id":3,"name":"editRole","type":"role","marked":0}]

and I use ng-repeat to repeat checkboxes using the values in that list like this

<div class="form-group">
    <label>Role Permissions:</label>
    <div class="checkbox" ng-repeat="permission in rolePermissionList">
       <label>
          <input type="checkbox" ng-model="idsPermission[permission .idPermission ]"
               ng-checked="permission.checked">
       </label>
    </div>
</div>

the ng-model of the checkboxes is named idsPermission and it's a list of numbers, those numbers are the IDS of the objects.

When I load the page the checkboxes that are supposed to be checked are checked this part works fine, but when I check another checkbox all the checkboxes gets checked, and when I uncheck a checkbox the same thing happens all the checkboxes gets unchecked.

I use that list of numbers named idsPermission to get all the IDS of the checkboxes that are checked, this worked before I used the directive ng-checked="permission.checked", but now I need to use it since now I need to show the checkboxes that are already marked.

this is my controller

angular.module('MyApp')
    .controller('RolCtrl', ['$scope', 'RolService',
        function ($scope, RolService) {
            $scope.idsPermission = {};
            $scope.getListCheckBoxesEditRole = function (idRole) {

                $scope.selectRol.descripcion;
                RolService.getListCheckBoxesEditRole(idRole)
                        .then(
                                function (d) {
                                    var userPermissionList = [];
                                    for (var permission in  d) {
                                        if (d[permission ].type === 'user') {
                                            if (d[permission ].marked === 1)
                                            {
                                                d[permission ].checked = true;
                                                userPermissionList.push(d[permission ]);
                                            } else {
                                                userPermissionList.push(d[permission ]);
                                            }
                                        }

                                    }
                                    $scope.rolePermissionList = userPermissionList;
                                },
                                function (errResponse) {
                                    console.error('ERROR');
                                }
                        );
            };
        }
        $scope.getListCheckBoxesEditRole(3);
    ]);

The RolService.getListCheckBoxesEditRole(idRole) service returns this JSON [{"id":1,"name":"createUser","type":"user","marked":1},{"id":2,"name":"deleteUser","type":"user","marked":1},{"id":3,"name":"editRole","type":"role","marked":0}]

and what I do in the controller is iterate over that list and check if the marked field is 1 if it's 1 I do this d[permission ].checked = true; I what I think that I do in that line is setting the checked value to true so I could use this directive in the html view ng-checked="permission.checked"

I tried doing this ng-checked="idsPermission[permission.checked]" but when I do this the values that are marked=1 in the JSON that I paste above don't appear checked when I load the page, but if I put it like this ng-checked="permission.checked" they appear marked as they should, but when I click a checkbox all the checkboxes gets selected.